POV-Ray is the program used
to create The Digital Museum of Modern Art. It can be downloaded
free from the Internet, and artists
have used it to create fantasy kingdoms and unique landscapes,
among other things. Biochemists and molecular biologists have adopted
the program as well.
Shown above is one depiction
of the solution structure of the Cdc13 DNA-binding domain in
complex with telomeric DNA (only Cdc13 DNA-binding domain shown
here).
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The essential Cdc13
protein in the yeast Saccharomyces cerevisiae is a single-stranded
telomeric DNA-binding protein required for chromosome end protection
and telomere replication.
The structure reveals
the use of a large OB fold augmented by an unusually large loop
for DNA recognition. This OB fold is structurally similar to
OB folds found in ciliated protozoan telomere end-binding protein, although no sequence similarity is apparent between them [emphasis supplied]. The common usage of an OB fold for telomeric
DNA interaction demonstrates conservation of end-protection mechanisms
among eukaryotes." Rachel M. Mitton-Fry and Deborah S. Wuttke,
et al. "Conserved Structure for Single-Stranded Telomeric
DNA Recognition. Science. April 15, 2002: 145-147. |
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The structure, determined
by NMR spectroscopy, was run through the POV-Ray program to create
a 3D image, illustrated here rotating on the y-axis. The first
half of the movie shows the main structural features of the protein,
while the second highlights individual amino acid side chains
which are responsible for DNA binding.
But what is a protein without
music? in this short movie, the protein is accompanied by music
from Dialtones [a Telesymphony]. Dialtones was
presented in two consecutive concerts in September, 2001, as
a co-production of Golan Levin and the Ars Electronica Festival,
and in seventeen performances in May / June 2002 at the Swiss
National Exposition.
As described by its creators:
"Dialtones is a large-scale concert performance whose sounds
are wholly produced through the carefully choreographed dialing
and ringing of the audience's own mobile phones. . . In an appropriate acoustic environment,
the sporadic triggering of calls to mobile phones can evoke the
placid chirps and trills of crickets, cicadas, frogs and birds."
But it also works well
with protein structures. Learn more here, at the Daniel Langlois Foundation >>>
telesymphony.
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